- Add api_tokens table with role-based access (researcher, developer, viewer)
- Add POST /auth/token/generate endpoint for creating tokens
- Add GET /auth/tokens endpoint for listing user's tokens
- Add DELETE /auth/tokens/{token_id} endpoint for revoking tokens
- Add agent_type field to documents (research, development, general)
- Implement role-based access control for documents:
- researcher: access to research and general documents
- developer: access to development and general documents
- viewer: read-only access
- Update document model and schemas with agent_type field
- Add comprehensive tests for API token functionality
- All existing tests pass (73 total)
- Extend Document model with reasoning_type, confidence, reasoning_steps, model_source, tiptap_content fields
- Add new endpoints:
- GET /documents/{id}/reasoning - Get reasoning metadata
- PATCH /documents/{id}/reasoning - Update reasoning metadata
- GET /documents/{id}/reasoning-panel - Get reasoning panel data for UI
- POST /documents/{id}/reasoning-steps - Add reasoning step
- DELETE /documents/{id}/reasoning-steps/{step} - Delete reasoning step
- GET /documents/{id}/content?format=tiptap|markdown - Get content in TipTap or Markdown
- PUT /documents/{id}/content - Update content (supports both TipTap JSON and Markdown)
- Add TipTap to Markdown conversion
- Update database schema with new columns
- Add comprehensive tests for all new endpoints
- All 37 tests passing
